PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G189600.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 390aa    MW: 43736 Da    PI: 8.2017
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G189600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.62.5e-3363120260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C +kkkvers  d++++ei+Y+g+Hnh+k
  Manes.02G189600.2.p  63 EDGYNWRKYGQKQVKGSENPRSYYKCTYPNCLTKKKVERSL-DGQITEIVYKGTHNHPK 120
                          7****************************************.***************85 PP
2WRKY107.47.2e-34235293159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d ++v++tYeg+Hnh+
  Manes.02G189600.2.p 235 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHDLRAVITTYEGKHNHD 293
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-2850121IPR003657WRKY domain
PROSITE profilePS5081123.54857121IPR003657WRKY domain
SuperFamilySSF1182901.7E-2558121IPR003657WRKY domain
SMARTSM007745.2E-3662120IPR003657WRKY domain
PfamPF031063.4E-2563119IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-38220295IPR003657WRKY domain
SuperFamilySSF1182901.44E-29227295IPR003657WRKY domain
PROSITE profilePS5081138.538230295IPR003657WRKY domain
SMARTSM007742.0E-39235294IPR003657WRKY domain
PfamPF031064.7E-26236293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MFQSSNTTIQ SAQQQGWSFQ ESVKQDDLAM GKNVRSFSPE IAAIQTLREQ QQNQSVRDQK  60
RSEDGYNWRK YGQKQVKGSE NPRSYYKCTY PNCLTKKKVE RSLDGQITEI VYKGTHNHPK  120
PQSTRRSSSS FSSASNQAMI ASNLASSEMQ AQSLITHGSR QMDSVPTPEN SSISMEDDDF  180
DSQKSRSRSD ELDEDEPVAK RWKAEGENEG ISAPGSRTVR EPRVVVQTTS DIDILDDGYR  240
WRKYGQKVVK GNPNPRSYYK CTSPGCPVRK HVERASHDLR AVITTYEGKH NHDIPAARGS  300
NSVNRPLPEN YNGRSNSNNN AAAMATRPSS VNHPQAPFSL EMFQNPENFA FSGFGDPVGS  360
YTNQSLSEHV FSRAKEEPRD DIFLESLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-3963296878Probable WRKY transcription factor 4
2lex_A3e-3963296878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G189600.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276430.0KT827643.1 Manihot esculenta WRKY transcription factor 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605353.10.0probable WRKY transcription factor 26
SwissprotQ6B6R41e-116WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2C9WGR10.0A0A2C9WGR1_MANES; Uncharacterized protein
STRINGcassava4.1_007752m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-112WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  2. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]