PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G190600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 503aa    MW: 57203.1 Da    PI: 6.1653
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G190600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.82.6e-941174991373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lLl  A+av++++l  a + L++l + +s +gd++qR++ yf+ AL+ar++   s  y+ +  ++ts    +e++ a++ ++ vsP+
  Manes.02G190600.1.p 117 LIHLLLITATAVDENNLDTALENLTELYQSVSLTGDSVQRVVVYFADALSARILTPKSPFYDMIMKEPTS----EEKFLAFTDLYRVSPY 202
                          689****************************************************9*****988888875....788899999******* PP

                 GRAS  91 lkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel. 172
                          ++++h+taNqaIlea+e+e     +++H+iDfd+s+G+QWp+L+q+L++++  +++ slRiTg g+    s eel+et++rL +f + + 
  Manes.02G190600.1.p 203 YQLAHFTANQAILEAFEKEeesnnRALHVIDFDVSYGFQWPSLIQSLSEKAttGNQVSLRITGYGR----SLEELQETESRLVSFTKGFr 288
                          *****************9988887789***********************9877788*********....9****************975 PP

                 GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                          ++ fef+ l+  + + ++++    k++E++aVnl+++l +l  e ++l++    +L+l+ sl+P +vv+veqe  +n +sFl rf+e+l+
  Manes.02G190600.1.p 289 NLIFEFQGLLRGSSKLMNPR---KKKNETVAVNLIFHLNTLN-EFLKLSD----TLNLIHSLNPSIVVLVEQEGIRNPGSFLSRFMESLH 370
                          8*******866666666665...589************9995.8888888....************************************ PP

                 GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegae.....rrerhetlekWrerleeaGFkpvplsekaakqaklllr..... 342
                          y++a+fdsle  lp es+er +vE+  lg+ei++++   +++     +  r e++e+W+ r+e+ GF+ ++ls+k+  qaklll+     
  Manes.02G190600.1.p 371 YFAAMFDSLEDCLPLESSERLSVEKNHLGKEIKSMLNYDKDNndndsKCSRYEKMETWKGRMESHGFSGIKLSSKTLIQAKLLLKirthy 460
                          ************************************876654222226789********************************9733222 PP

                 GRAS 343 ...kv..k.sdgyrveee.sgslv.lgWkdrpLvsvSaW 373
                             ++  + s+g+rv e+ +g ++ lgW+dr+L+++SaW
  Manes.02G190600.1.p 461 sslQFdgEsSNGFRVFERdEGRAIsLGWQDRSLLTASAW 499
                          2111111123557776553566667************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.91891467IPR005202Transcription factor GRAS
PfamPF035148.8E-92117499IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MNSQPVIIIS SSLVLISLAT FINFFLSLSL FFTESSSSQM MEGLVEEEEL LNLSLAIVSE  60
SGGERRRKRK IRALFDSSNS YEGGEGKIFK LLQMREQMLK PDNKRKRVVE DGRSLHLIHL  120
LLITATAVDE NNLDTALENL TELYQSVSLT GDSVQRVVVY FADALSARIL TPKSPFYDMI  180
MKEPTSEEKF LAFTDLYRVS PYYQLAHFTA NQAILEAFEK EEESNNRALH VIDFDVSYGF  240
QWPSLIQSLS EKATTGNQVS LRITGYGRSL EELQETESRL VSFTKGFRNL IFEFQGLLRG  300
SSKLMNPRKK KNETVAVNLI FHLNTLNEFL KLSDTLNLIH SLNPSIVVLV EQEGIRNPGS  360
FLSRFMESLH YFAAMFDSLE DCLPLESSER LSVEKNHLGK EIKSMLNYDK DNNDNDSKCS  420
RYEKMETWKG RMESHGFSGI KLSSKTLIQA KLLLKIRTHY SSLQFDGESS NGFRVFERDE  480
GRAISLGWQD RSLLTASAWH CV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-611014992377Protein SCARECROW
5b3h_D6e-611014992377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G190600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596075.10.0protein SCARECROW-like
TrEMBLA0A2C9WFC90.0A0A2C9WFC9_MANES; Uncharacterized protein
STRINGcassava4.1_029253m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.13e-58GRAS family protein