PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G195000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 257aa    MW: 28614.9 Da    PI: 8.5987
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G195000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.48.1e-294192456
          ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56
                         v+YkeC++NhAas+G ha DGCgEf+p  g++gt + l+CaACgCHRnFHRre
  Manes.02G195000.1.p 41 VKYKECMRNHAASIGRHANDGCGEFIPR-GDDGTREFLTCAACGCHRNFHRRE 92
                         89*************************9.999********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.2E-284192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-174192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-254292IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.1874392IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.79E-19152225IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-29155226IPR009057Homeodomain-like
TIGRFAMsTIGR015653.8E-27165220IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDLSLVPYQH TSPSLPHHHD HDHPRSQHPI IIRPNPDNYL VKYKECMRNH AASIGRHAND  60
GCGEFIPRGD DGTREFLTCA ACGCHRNFHR REGGASSSLQ HYDHHYQVFS YNAASGKKHL  120
MSSYFDDGTD IDDHDRRSET PEREEVNVAS GGRSGAAAAA GMKNKRFRTK FTQEQKERML  180
GFAEKIGWRI NKNDDVALNN FCNEVGVKRS VLKVWMHNNK SAHRRKEAAP PVSPVAAPPP  240
PPPPDQPPAP PQPAGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-251652221875ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G195000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603363.10.0zinc-finger homeodomain protein 2-like
TrEMBLA0A2C9WHS20.0A0A2C9WHS2_MANES; Uncharacterized protein
STRINGcassava4.1_025934m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150921014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-51homeobox protein 22