PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G200100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Whirly
Protein Properties Length: 230aa    MW: 25466.4 Da    PI: 10.4598
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G200100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly200.71.9e-62531891137
               Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkv 90 
                          sv+k+kaal+v++v ptf++ld+gn+k++r+G ++l++++a++erkyd+ek+q+falsatev++l++l++k+s+effhdp++ +sn+G+v
  Manes.02G200100.1.p  53 SVFKGKAALSVQPVPPTFTKLDTGNVKVERRGIMMLTFMPAIGERKYDYEKRQHFALSATEVGSLISLGPKDSSEFFHDPSMLSSNAGQV 142
                          79**************************************************************************************** PP

               Whirly  91 rkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                          rk+l+++P +dGsG+f++l+v n+++++ne+fsvP++ +efavl+++
  Manes.02G200100.1.p 143 RKSLSIKPQADGSGYFMSLTVVNNILRTNERFSVPLTAGEFAVLKTA 189
                          *********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF544475.1E-6545209IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.103.4E-7445206IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.7E-5954188IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MKLSRFLQHS RNSLGKYIDV RDASRLHALT FQAGISTARQ DFIANERIYA PYSVFKGKAA  60
LSVQPVPPTF TKLDTGNVKV ERRGIMMLTF MPAIGERKYD YEKRQHFALS ATEVGSLISL  120
GPKDSSEFFH DPSMLSSNAG QVRKSLSIKP QADGSGYFMS LTVVNNILRT NERFSVPLTA  180
GEFAVLKTAC SFALPHIMGW DRLTAKLPRE AVGIPLKANL REPGLEWAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A6e-904720610169StWhy2
3n1i_A6e-904720610169protein StWhy2
3n1j_A6e-904720610169Protein StWhy2
3n1k_A6e-904720610169protein StWhy2
3n1l_A6e-904720610169protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G200100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599713.11e-171single-stranded DNA-bindig protein WHY2, mitochondrial-like
SwissprotD9J0344e-95WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2C9WFY51e-169A0A2C9WFY5_MANES; Uncharacterized protein
STRINGcassava4.1_015441m1e-148(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-91WHIRLY 2