PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G205100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 379aa    MW: 43707.2 Da    PI: 8.8832
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G205100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.5e-0780101223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C+ Cg sF+ + +Lk+H+++H
  Manes.02G205100.1.p  80 TCQECGASFKKPAYLKQHMQSH 101
                          6*******************99 PP
2zf-C2H219.92e-06107131123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          y+C+  dC+ s++rk++L+rH+ tH
  Manes.02G205100.1.p 107 YVCSadDCHASYRRKDHLTRHLLTH 131
                          99*********************99 PP
3zf-C2H211.50.00092136161123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          ++Cp  +C+  F  + n krH +  H
  Manes.02G205100.1.p 136 FRCPieNCSLEFVFQGNVKRHVKElH 161
                          89********************9988 PP
4zf-C2H222.62.7e-07175199123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          y+C+   Cgk+F+ +s L++H  +H
  Manes.02G205100.1.p 175 YVCHetGCGKVFKYPSKLQKHEDSH 199
                          9********************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355163557IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.7253562IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.44579106IPR007087Zinc finger, C2H2
SMARTSM003550.004379101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.3E-880107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SuperFamilySSF576673.4E-1093133No hitNo description
SMARTSM003550.013107131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.284107136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-10108133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280109131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-5117165No hitNo description
PROSITE profilePS501579.806136166IPR007087Zinc finger, C2H2
SMARTSM003550.14136161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138161IPR007087Zinc finger, C2H2
SuperFamilySSF576678.78E-6168200No hitNo description
Gene3DG3DSA:3.30.160.601.6E-8171199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.011175204IPR007087Zinc finger, C2H2
SMARTSM003550.0012175199IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280177199IPR007087Zinc finger, C2H2
SMARTSM003557.9207232IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280209232IPR007087Zinc finger, C2H2
SMARTSM0035516235256IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.17E-6246304No hitNo description
PROSITE profilePS5015710.408266296IPR007087Zinc finger, C2H2
SMARTSM003550.032266291IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-5267295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280268291IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.1E-4296319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.9297323IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280299323IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGIDRIGFRV RGTTKMEETA EIERPRPIFR DIRRYFCDYC GICRSKKSLI TSHIQKHHKE  60
EMDKEKAHGD EKIEGVRSNT CQECGASFKK PAYLKQHMQS HSLMRPYVCS ADDCHASYRR  120
KDHLTRHLLT HVGKLFRCPI ENCSLEFVFQ GNVKRHVKEL HNENCPSTNV GQKQYVCHET  180
GCGKVFKYPS KLQKHEDSHV KLESVEAFCA EPGCMKHFSN AQCLKAHIYS CHRYMSCEIC  240
GTKQLKKNLK RHLRTHEAGG QSMEKIECHF EGCCHVFSSK TNLNLHIKAV HLEGRPFTCG  300
VPGCDMRFAY KHVRDKHEKS GCHIYTPGDF VESDEQFRSR PRGGRKRKCP TVEMLIRKRV  360
NAPIDLDGCH AFFQSMES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A7e-198324119174PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D7e-198324119174PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339347RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G205100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599203.10.0transcription factor IIIA-like isoform X1
SwissprotQ84MZ41e-146TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2C9WFP30.0A0A2C9WFP3_MANES; Uncharacterized protein
STRINGcassava4.1_010279m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-148transcription factor IIIA