PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G205100.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 364aa    MW: 42018.2 Da    PI: 8.6985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G205100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.1e-076586223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         +C+ Cg sF+ + +Lk+H+++H
  Manes.02G205100.2.p 65 TCQECGASFKKPAYLKQHMQSH 86
                         6*******************99 PP
2zf-C2H219.91.9e-0692116123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          y+C+  dC+ s++rk++L+rH+ tH
  Manes.02G205100.2.p  92 YVCSadDCHASYRRKDHLTRHLLTH 116
                          99*********************99 PP
3zf-C2H211.60.00087121146123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          ++Cp  +C+  F  + n krH +  H
  Manes.02G205100.2.p 121 FRCPieNCSLEFVFQGNVKRHVKElH 146
                          89********************9988 PP
4zf-C2H222.72.5e-07160184123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          y+C+   Cgk+F+ +s L++H  +H
  Manes.02G205100.2.p 160 YVCHetGCGKVFKYPSKLQKHEDSH 184
                          9********************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.7252047IPR007087Zinc finger, C2H2
SMARTSM00355162042IPR015880Zinc finger, C2H2-like
SMARTSM003550.00436486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.4456491IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.8E-86592IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SuperFamilySSF576673.3E-1078118No hitNo description
PROSITE profilePS5015710.28492121IPR007087Zinc finger, C2H2
SMARTSM003550.01392116IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.3E-1093118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-5102150No hitNo description
SMARTSM003550.14121146IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806121151IPR007087Zinc finger, C2H2
PROSITE patternPS000280123146IPR007087Zinc finger, C2H2
SuperFamilySSF576678.72E-6155185No hitNo description
Gene3DG3DSA:3.30.160.601.5E-8156184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.011160189IPR007087Zinc finger, C2H2
SMARTSM003550.0012160184IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162184IPR007087Zinc finger, C2H2
SMARTSM003557.9192217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194217IPR007087Zinc finger, C2H2
SMARTSM0035516220241IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.24E-6231289No hitNo description
SMARTSM003550.032251276IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408251281IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5252280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280253276IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-4281304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.9282308IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280284308IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEETAEIERP RPIFRDIRRY FCDYCGICRS KKSLITSHIQ KHHKEEMDKE KAHGDEKIEG  60
VRSNTCQECG ASFKKPAYLK QHMQSHSLMR PYVCSADDCH ASYRRKDHLT RHLLTHVGKL  120
FRCPIENCSL EFVFQGNVKR HVKELHNENC PSTNVGQKQY VCHETGCGKV FKYPSKLQKH  180
EDSHVKLESV EAFCAEPGCM KHFSNAQCLK AHIYSCHRYM SCEICGTKQL KKNLKRHLRT  240
HEAGGQSMEK IECHFEGCCH VFSSKTNLNL HIKAVHLEGR PFTCGVPGCD MRFAYKHVRD  300
KHEKSGCHIY TPGDFVESDE QFRSRPRGGR KRKCPTVEML IRKRVNAPID LDGCHAFFQS  360
MES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A7e-196822619174PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D7e-196822619174PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324332RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G205100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599211.10.0transcription factor IIIA-like isoform X2
SwissprotQ84MZ41e-146TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2C9WFP30.0A0A2C9WFP3_MANES; Uncharacterized protein
TrEMBLA0A2C9WIB90.0A0A2C9WIB9_MANES; Uncharacterized protein
STRINGcassava4.1_010279m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-149transcription factor IIIA