PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G208000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 177aa    MW: 19698 Da    PI: 5.3228
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G208000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-171363155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s y+GVr +k +g+Wv+eIr+p   gk+ r++lg+f t e+Aa a++ a++ ++g
  Manes.02G208000.1.p 13 SSYRGVRKRK-WGKWVSEIREP---GKKNRIWLGSFETSEMAATAYDVAALHFRG 63
                         67*****999.**********8...5579**********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-221372IPR016177DNA-binding domain
PfamPF008471.3E-111363IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-321472IPR001471AP2/ERF domain
SMARTSM003808.4E-391477IPR001471AP2/ERF domain
PROSITE profilePS5103223.961471IPR001471AP2/ERF domain
CDDcd000182.40E-311573No hitNo description
PRINTSPR003675.8E-131526IPR001471AP2/ERF domain
PRINTSPR003675.8E-135373IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MQEQSSSHGG TSSSYRGVRK RKWGKWVSEI REPGKKNRIW LGSFETSEMA ATAYDVAALH  60
FRGREAKLNF PELVNHLPKP ASSNAEDIRM AAHEAALRLR TPVKEPEGGG SSNNVVGPVT  120
VRLSPSQIQA INESPLDSPK MWMEMAMVEE SMMFSNDAGE DDDWNYNMQN DSLWDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-181575667ATERF1
3gcc_A2e-181575667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G208000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605702.11e-128ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I21e-61ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A2C9WFS21e-127A0A2C9WFS2_MANES; Uncharacterized protein
STRINGcassava4.1_025138m1e-128(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.18e-61ERF family protein