PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G009300.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 226aa    MW: 24732.9 Da    PI: 9.5005
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G009300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.1e-3066124259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkkkv+r+aed+++++ tYegeHnh+
  Manes.03G009300.2.p  66 KDGYQWRKYGQKVTKDNPSPRAYFRCSMApSCPVKKKVQRCAEDKTFLVATYEGEHNHD 124
                          8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-2961124IPR003657WRKY domain
SuperFamilySSF1182901.83E-2563125IPR003657WRKY domain
PROSITE profilePS5081125.29365126IPR003657WRKY domain
SMARTSM007745.7E-3465125IPR003657WRKY domain
PfamPF031062.1E-2466124IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVEVMSGKLS ALRSNVQEIG SNSPLSGVSP YELYGLNKRP RIEIPMSKPS QILVKTDPKD  60
KSLNLKDGYQ WRKYGQKVTK DNPSPRAYFR CSMAPSCPVK KKVQRCAEDK TFLVATYEGE  120
HNHDPNGSPG HSMYSPDSLS RSSRSSTVSC PVTSSPFQTE VALDLTLSSP THDHKEKPRQ  180
TSLEDNISSN TNKVEEYVAS LAKDPSFTVA LAAAVARSLS TPRVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-2150124172WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G009300.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276150.0KT827615.1 Manihot esculenta WRKY transcription factor 40 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605797.11e-166WRKY transcription factor WRKY76-like isoform X1
RefseqXP_021605798.11e-166WRKY transcription factor WRKY76-like isoform X2
RefseqXP_021605799.11e-166WRKY transcription factor WRKY76-like isoform X2
SwissprotQ6IEK53e-43WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A140H8P41e-165A0A140H8P4_MANES; WRKY transcription factor 40
TrEMBLA0A2C9W5Z61e-165A0A2C9W5Z6_MANES; Uncharacterized protein
STRINGcassava4.1_014368m1e-166(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.27e-39WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]