PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G023700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 362aa    MW: 39136.2 Da    PI: 6.414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G023700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000452372751255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Manes.03G023700.1.p 237 RKEKLGDRITSLHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 275
                          6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.858225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-7235283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-5235279No hitNo description
SuperFamilySSF474595.23E-10235286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MNRGVLQTSP PLQMAGNPNW WNINNMKPPT HQQTSPFLNP PSFFPQYYIP SASASSPSSS  60
SSSSSSSSSS CSSSSSSSSL ALPSWHDNQD QLPESWSQLL MGGLVDEDDK GNMRHFQAKK  120
MENWEAQILH HQASTTCTVV DVKRENSATS YVYGHANEEF QAAKPSCSQM IPPASSSPMS  180
SVTSFSSNML DFSTHIGDAR HPPSDLSSEC NSTATGGALK KARVQQPSST QSTFKVRKEK  240
LGDRITSLHQ LVSPFGKTDT ASVLLEAIGY IRFLQSQIEA LSSPYLGSGS SNMKQQQQQQ  300
LQSVQGERNC ILPEEPGQNY NEEPKDLRSR GLCLVPVSCT LQVGSDNGAD YWAPAIGGGF  360
Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G023700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607869.10.0transcription factor bHLH68-like isoform X1
SwissprotQ8S3D13e-89BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A2C9W3Y20.0A0A2C9W3Y2_MANES; Uncharacterized protein
STRINGcassava4.1_010397m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]