PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G032300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 267aa    MW: 28991.4 Da    PI: 9.0355
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G032300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.6e-12109153347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
  Manes.03G032300.1.p 109 PWTEDEHRTFLIGLERLGKGDWRGISRNYVTTRTPTQVASHAQKY 153
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.103.4E-4320IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.598320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.654102158IPR017930Myb domain
SuperFamilySSF466894.76E-17103159IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-17105156IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.7E-10106152IPR009057Homeodomain-like
SMARTSM007172.2E-8106156IPR001005SANT/Myb domain
CDDcd001671.12E-7109154No hitNo description
PfamPF002495.5E-10109153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCTN FRGTVAAGLR LFGVQLDLTS AAAAASPSLA MKKSFSMECL  60
PSSSSSSSPS SSSLCSSRVS VDDNPDRTST DYLSDGLIGP VQERKKGTPW TEDEHRTFLI  120
GLERLGKGDW RGISRNYVTT RTPTQVASHA QKYFLRLASL NKKKRRSSLF DMVRSSSQAN  180
GDHVPSHQYE IQNDTILPLT LANNQENDEY PQLVSDNNSL LPLPKPSNRS KKTSSDDDLE  240
LTLACPISVE GSKASTSPFF VSIRAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G032300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankMNHRBCSA1e-69M95930.1 Manihot esculenta (clone rubssr37) ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit EC 4.1.1.39 (rbc S) mRNA sequence.
GenBankMNHRUBISCO1e-69M96583.1 Manihot esculenta ribulose 1,5-bisphosphate carboxylase mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606629.10.0transcription factor KUA1
SwissprotQ9LVS07e-50KUA1_ARATH; Transcription factor KUA1
TrEMBLA0A2C9W4A30.0A0A2C9W4A3_MANES; Uncharacterized protein
STRINGcassava4.1_014027m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.15e-55MYB_related family protein
Publications ? help Back to Top
  1. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]