PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G033200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 305aa    MW: 33924.1 Da    PI: 8.9395
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G033200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19171204134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Manes.03G033200.1.p 171 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 204
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.8E-20165217IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.624165201IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-12165205No hitNo description
Gene3DG3DSA:3.30.50.101.5E-15169204IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.84E-12170198No hitNo description
PROSITE patternPS003440171196IPR000679Zinc finger, GATA-type
PfamPF003204.8E-17171204IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MTPLYHSPFL IDLNEGQQHD QLFFSKSTEE EAPSSSSYVS ILNNPSQEFA DYYHRDLQPL  60
IQHQAEANIS ASHGGSWDYP NENESGFKLS SAVCKEENTN EDQRENSSVK WMSSKMRLMK  120
RMMSSSDQTV SGKPETCMHK FEDDKERSLP LQDDNSSKNF SCSSSNSIRV CADCNTTKTP  180
LWRSGPRGPK SLCNACGIRQ RKARRAMAAA AAQTAGASGT IFGSKASAMK TKMKNKERKT  240
SDSHLPLKKR CKFTAQARGR KKLCFEDSPI NLSKNSAFHQ QVFPQDEKEA AILLMALSYG  300
LVHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G033200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606592.10.0putative GATA transcription factor 22
TrEMBLA0A2C9W4740.0A0A2C9W474_MANES; Uncharacterized protein
STRINGcassava4.1_012587m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-28cytokinin-responsive gata factor 1