PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G047800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 298aa    MW: 32950 Da    PI: 8.4963
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G047800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.7e-19167200134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C+ C+tt+TplWR+gp g+k+LCnaCG+++rk +
  Manes.03G047800.1.p 167 CTDCNTTTTPLWRSGPLGPKSLCNACGIRQRKAR 200
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.33E-12160201No hitNo description
SMARTSM004018.8E-18161212IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.782161197IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-15165201IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.42E-13166198No hitNo description
PfamPF003202.1E-16167200IPR000679Zinc finger, GATA-type
PROSITE patternPS003440167192IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTPVCDLNPP TSSSFPALEL KEDQQHLQLF LSPHQAAASL SSSAPAFLNT AHDQYHREAQ  60
QHVKEDDKYI SDSRWSDDLH KAQSFQAAVE NESSSRETHE LSPCKREDYE GSRGDEGSAA  120
KWTPARMRLM QKMMNSNCSV TNNPMKFTPK FQDHQQCDSN NNTIRVCTDC NTTTTPLWRS  180
GPLGPKSLCN ACGIRQRKAR RAMEAAAAGA NGTAVSTEMS STKNKLHKEK KWRSGQIAQG  240
RKLCKPPDSP QGQKKICSFK NLALSLSKNS ALQRVLPQDV EEAAILLMEL SCGFIHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G047800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606819.10.0putative GATA transcription factor 22
TrEMBLA0A2C9W4R70.0A0A2C9W4R7_MANES; Uncharacterized protein
STRINGcassava4.1_012866m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.14e-17cytokinin-responsive gata factor 1