PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G049100.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 529aa    MW: 57160.8 Da    PI: 8.7943
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G049100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-0581103123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +C+k F r  nL+ H r H
  Manes.03G049100.2.p  81 FICDICNKGFQRDQNLQLHRRGH 103
                          89*******************88 PP
2zf-C2H213.30.00025157179123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k++  +s+ k H +t+
  Manes.03G049100.2.p 157 WKCEKCSKRYAVQSDWKAHSKTC 179
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.73E-780103No hitNo description
Gene3DG3DSA:3.30.160.602.6E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78381103IPR007087Zinc finger, C2H2
SMARTSM003550.02781103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355220122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.73E-7152177No hitNo description
SMARTSM00355130157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MMKGLIMDES LSNLTSASGE IIASSGNRIE TPGTMYLQQS SFPSTNQAPP PKKKRNLPGN  60
PDPDAEVIAL SPKTLLATNR FICDICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKEVRKK  120
VYVCPEATCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG  180
TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESAKAITLDP ILSTHQQPSS SASHMINLQS  240
LSVKREQESF HLFNGRPSNN VPPWLACHHG PPQMNLSSSL FAENLDQTFL QHENPSPNPN  300
TTVLPSFKSS PHMSATALLQ KAAQMGVTMS KPSSSLASGS GAAMLRPHQA HMSGTTSDFI  360
STSVATSTAG SGLGLSSSED MGHGLAPFGN KAAATTGIVG PSSLVLDVMS SFSSASGFDG  420
SSFDEDFNGM LNPKRDGNNF QETLSNSKST ESHFSNRSEH EDKGAATTAS AGGGRHGHGN  480
DGLTRDFLGL KAFSHKDFLN LAGLGGHINS SSSSTYEQQN QNQAPWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35153218368Zinc finger protein JACKDAW
5b3h_F3e-35153218368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107119KLKQRTNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G049100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608135.10.0protein indeterminate-domain 12-like isoform X2
SwissprotQ9LRW71e-126IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A2C9W4K30.0A0A2C9W4K3_MANES; Uncharacterized protein
STRINGcassava4.1_005370m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-121indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]