PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G056100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 210aa    MW: 23281.3 Da    PI: 4.5694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G056100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-191969155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ykGVr +k +g+Wv+eIr p++   r r++lg+f+tae+Aa a +aa  +l+g
  Manes.03G056100.1.p 19 PKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSFDTAEKAALAFDAALYCLRG 69
                         79*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-111969IPR001471AP2/ERF domain
CDDcd000184.53E-301979No hitNo description
SuperFamilySSF541718.5E-212078IPR016177DNA-binding domain
PROSITE profilePS5103222.0892077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-302078IPR001471AP2/ERF domain
SMARTSM003802.0E-322083IPR001471AP2/ERF domain
PRINTSPR003675.0E-102132IPR001471AP2/ERF domain
PRINTSPR003675.0E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVKPGTSSEQ PSSDKNHEPK YKGVRKRKWG KWVSEIRLPN SRERIWLGSF DTAEKAALAF  60
DAALYCLRGR EAKFNFPDNP PNIAGGQSLS PQEIQVVAAR FANENSRMIR STTTSVGESS  120
SSQVMDQCLS SSSDGAAQVD SDTIDWSSIL NELDSTEGAP EYGMYPGLGN QYYPSQPYVF  180
DDYHINNGNN DDNQNGDEAY SHQSFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1620771472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G056100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607005.11e-156ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC26e-51ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2C9W4U11e-155A0A2C9W4U1_MANES; Uncharacterized protein
STRINGcassava4.1_034356m1e-156(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.18e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]