PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G059100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 363aa    MW: 39921.8 Da    PI: 6.298
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G059100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17253287135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Manes.03G059100.1.p 253 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 287
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-8015343IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.36247283IPR000679Zinc finger, GATA-type
SMARTSM004014.4E-17247297IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-15249311No hitNo description
Gene3DG3DSA:3.30.50.102.5E-14249284IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.18E-14252299No hitNo description
PfamPF003201.3E-15253287IPR000679Zinc finger, GATA-type
PROSITE patternPS003440253278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEAPELDNQS GFCSQFANEK NQSLDSKPGG GGDHFIVEDL LDFSNEDAVI TDGSSFDTVT  60
GNSTDSSTVS IVESCNSSSF SGSEPWYNGD SGSHNFADDQ FSSDLCVPYD DLAELEWLSN  120
FVEESFSSED LQKLHLISGK KARTDESSET RNFHPNSDVN NSNTAASTNN NHPIFHTEMS  180
VPAKARSKRS RAAPCNWASR LLVLSPTTSS SDTEIVVAPT HHPNSGKKTV KIPASKRRDC  240
EDGGTGSGDG RKCLHCATDK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV  300
LTKHSNSHRK VLELRRKKEL LKAQQQQQQQ FLHHHQNMVF DVSNGDDYLI HQHMGPDFRQ  360
LI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G059100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608919.10.0GATA transcription factor 12-like
SwissprotP697812e-96GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2C9W7280.0A0A2C9W728_MANES; GATA transcription factor
STRINGcassava4.1_010335m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.19e-78GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]