PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G105000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 171aa    MW: 19711.5 Da    PI: 9.6542
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G105000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.2e-182474656
                         S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          +t++q++ Le++F  ++++  e + eLA++lg++ +qV +W+qNrRa++k
  Manes.03G105000.1.p 24 GLTHDQVRLLERAFTTTKKLEPELKLELANQLGVPPKQVAIWYQNRRARWK 74
                         689***********************************************9 PP
2HD-ZIP_I/II101.66.8e-3321112293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr l+++qv+lLE+ F++++kLepe K ela++Lg+ p+qva+W+qnrRAR+kt+ lE d+++L+ ++++  ++++rLe+ev +Lr+el
  Manes.03G105000.1.p  21 NKRGLTHDQVRLLERAFTTTKKLEPELKLELANQLGVPPKQVAIWYQNRRARWKTQSLELDHRRLQVKLENALADKRRLEREVVQLRDEL 110
                          6999************************************************************************************99 PP

          HD-ZIP_I/II  92 ke 93 
                          +e
  Manes.03G105000.1.p 111 RE 112
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-161577IPR009057Homeodomain-like
PROSITE profilePS5007115.3541676IPR001356Homeobox domain
SMARTSM003899.4E-161980IPR001356Homeobox domain
PfamPF000461.6E-152474IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-182580IPR009057Homeodomain-like
CDDcd000862.73E-132577No hitNo description
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDFFHHAQSQ QKRRRPPKHS NKRGLTHDQV RLLERAFTTT KKLEPELKLE LANQLGVPPK  60
QVAIWYQNRR ARWKTQSLEL DHRRLQVKLE NALADKRRLE REVVQLRDEL REAQIMAFAF  120
SPEMVPSHPA PSPLPFHSCF EGGSLASLHE DVNGEVLQFD ELYACLIGSG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G105000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605989.11e-124homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A2C9W6A71e-122A0A2C9W6A7_MANES; Uncharacterized protein
STRINGcassava4.1_024251m1e-123(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-33homeobox protein 52