PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G137600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 575aa    MW: 62297.9 Da    PI: 6.8541
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G137600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.2e-32224281260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Manes.03G137600.1.p 224 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 281
                          8****************************************.***************85 PP
2WRKY106.21.6e-33389447159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Manes.03G137600.1.p 389 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 447
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-27221282IPR003657WRKY domain
SuperFamilySSF1182908.5E-25222282IPR003657WRKY domain
SMARTSM007743.8E-34223281IPR003657WRKY domain
PfamPF031061.3E-24224280IPR003657WRKY domain
PROSITE profilePS5081122.905224282IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37374449IPR003657WRKY domain
SuperFamilySSF1182902.22E-29381449IPR003657WRKY domain
PROSITE profilePS5081138.825384449IPR003657WRKY domain
SMARTSM007743.1E-39389448IPR003657WRKY domain
PfamPF031063.4E-26390447IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MDNSSSESEL QLCGPSHGVS DSGDPMRHES DAAGVAGSGG ARYKLMSPAK LPISRSPCIT  60
IPPGLSPTSF LESPVLLSNV KVEPSPTTGS LTKPQMEHGF LGSNTYSMKV PSNALEERKY  120
SCFEFRPHAR SNLVPADMNH QRSECVQGQC QSQSHPPSPA VKNEMAVPSN EFSLTAPLPT  180
VTSGVSAPTE IDSDELNQMG ISNSGLQASQ SDHKGGNGIS MPSDDGYNWR KYGQKHVKGS  240
EFPRSYYKCT HPNCEVKKLF ERSHDGQITE IVYKGTHDHP KPQPSRRYAA GAVLSMQEDR  300
SDKISSLPGG DDKSSSAFGQ VPNTIEPNNA PELSPVMTND DSIEGAEDED DSFSKRRKMD  360
TGGFDVTPVI KPIREPRVVV QTLSEVDILD DGYRWRKYGQ KVVRGNPNPR SYYKCTNAGC  420
PVRKHVERAS HDPKAVITTY EGKHNHDVPT ARSSSHDTVG PTLVNGSSRI RSDENETISL  480
DLGVGISSTA ENRSTDQQHG PHSELTKSQT QTSGSGFRIV PRIPIAPSYS VLNGGVNQYG  540
SRQNPNEGRS VEIPALSHSS YPYPQNMGRL LTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36224449877Probable WRKY transcription factor 4
2lex_A1e-36224449877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G137600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276070.0KT827607.1 Manihot esculenta WRKY transcription factor 32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607976.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2C9W7B00.0A0A2C9W7B0_MANES; Uncharacterized protein
STRINGcassava4.1_004461m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein