PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.03G141500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NF-YB

Protein Properties

Length: 244aa MW: 26755.1 Da PI: 9.0832

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.03G141500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	168.9	5.9e-53	68	164	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 vreqd+++Pianv+rim+++lPa+akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf++y+epl+++l++y Manes.03G141500.1.p 68 VREQDQYMPIANVIRIMRRILPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDNYIEPLTLFLNRY 157 69************************************************************************************** PP NF-YB 91 relegek 97 re+e+++ Manes.03G141500.1.p 158 RETENDR 164 **997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.2E-49	63	169	IPR009072	Histone-fold
SuperFamily	SSF47113	7.92E-37	71	169	IPR009072	Histone-fold
Pfam	PF00808	2.3E-25	74	138	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.0E-16	102	120	No hit	No description
PROSITE pattern	PS00685	0	105	121	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.0E-16	121	139	No hit	No description
PRINTS	PR00615	5.0E-16	140	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MERGGRLHRY RKHAKQPVAS SGPGSSLAPA NINPPRLPSF SQIKANEGNS STATQANQLG 60 HQPRPCMVRE QDQYMPIANV IRIMRRILPA HAKISDDAKE TIQECVSEYI SFITGEANER 120 CQREQRKTIT AEDVLWAMGK LGFDNYIEPL TLFLNRYRET ENDRSSIREN ILKRSSAGVV 180 EYGMPAFVPS FPMGPPPPAF GGSLIGGYYR NVSDSAAGLG GGSSDSNPNP NPLANFDPFA 240 QFK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	7e-60	68	159	6	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269\|PubMed:12509518, ECO:0000269\|PubMed:17322342}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.03G141500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR232278	2e-74	KR232278.1 Vernicia fordii nuclear transcription factor Y subunit B-14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021606411.1	0.0	nuclear transcription factor Y subunit B-9-like
Swissprot	Q84W66	2e-64	NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBL	A0A2C9W7D3	1e-180	A0A2C9W7D3_MANES; Uncharacterized protein
STRING	cassava4.1_025848m	1e-149	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2728	32	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	3e-64	NF-YB family protein

Link Out ? help Back to Top
Phytozome	Manes.03G141500.1.p

Publications ? help Back to Top
Jia H,McCarty DR,Suzuki M Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression. Plant Physiol., 2013. 163(3): p. 1293-305 [PMID:24043445] Kim HU, et al. Ectopic overexpression of castor bean LEAFY COTYLEDON2 (LEC2) in Arabidopsis triggers the expression of genes that encode regulators of seed maturation and oil body proteins in vegetative tissues. FEBS Open Bio, 2013. 4: p. 25-32 [PMID:24363987] Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant, 2017. 10(4): p. 645-648 [PMID:27871811] Li D, et al. MYB89 Transcription Factor Represses Seed Oil Accumulation. Plant Physiol., 2017. 173(2): p. 1211-1225 [PMID:27932421] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Han JD, et al. Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program. Front Plant Sci, 2017. 8: p. 439 [PMID:28421087]