PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G147500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 333aa    MW: 37682.2 Da    PI: 7.7445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G147500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-19157206255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  Manes.03G147500.1.p 157 SFRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAVAYDTAAYMLRG 206
                          59******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.78E-32156216No hitNo description
Gene3DG3DSA:3.30.730.102.2E-32157215IPR001471AP2/ERF domain
PROSITE profilePS5103223.077157214IPR001471AP2/ERF domain
SMARTSM003801.0E-36157220IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22158215IPR016177DNA-binding domain
PfamPF008471.0E-12158206IPR001471AP2/ERF domain
PRINTSPR003677.4E-11158169IPR001471AP2/ERF domain
PRINTSPR003677.4E-11180196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
METFKHEDLP CWKSFHGMAT GSKYFHDSII WGASTDITTY PDNGTSGNRP TTKSLIESSN  60
IPQELRFLNP SEQMNTTDSL GENQRFEPMC LFPNTSFCMH QLGQIQGQPS EERLKINPTK  120
GFNDHWLGTT KTQLMKYTGR RLQNQHHQKS ASSPGKSFRG VRQRHWGKWV AEIRLPRNRT  180
RVWLGTFDTA EEAAVAYDTA AYMLRGDDAR LNFPDLKHQT KANSLNGTTA ALLEAKLHAI  240
SGQEKHSIHI GPPSPEKHAH DNNTKQLKGF GQNPSRKQWQ FELESKVEFD CQVNAKENAQ  300
EVVAFDKDAV QLNRIPSLDM DLIWDAMLVS DS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20153214163ATERF1
3gcc_A3e-20153214163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G147500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608744.10.0ethylene-responsive transcription factor ERF062-like isoform X2
TrEMBLA0A2C9WA330.0A0A2C9WA33_MANES; Uncharacterized protein
STRINGcassava4.1_021788m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.13e-47ERF family protein