PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G154500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 262aa    MW: 28957.7 Da    PI: 7.8017
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G154500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-19182216135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Manes.03G154500.1.p 182 CQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 216
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-15176226IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.374176212IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.0E-15177214IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.61E-15178240No hitNo description
CDDcd002021.52E-15181229No hitNo description
PfamPF003203.7E-17182216IPR000679Zinc finger, GATA-type
PROSITE patternPS003440182207IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MESLDPAACF IMDDLLDFAS DIGERDDDEH SNKPTKAFPP LNPSPNGLAV APLPFDVFDH  60
PDPSPEFAEE ELEWLSNKDA FPAVETFVDI ISENPGGLPK QRSPVSVLEN STTSSTSNSG  120
NSGTNGSITM DYCWSLQVPV KARSKHHRSR RRDLQGQQCW WSLENLRKVK PAVTSSTMGR  180
KCQHCGAEKT PQWRAGPLGP KTLCNACGVR YKSGRLVPEY RPASSPTFRS ELHSNSHRKV  240
MEMRKQKLIM GSMVVKAMEK G*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G154500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607544.10.0GATA transcription factor 1-like isoform X1
RefseqXP_021607545.10.0GATA transcription factor 1-like isoform X2
SwissprotQ8LAU97e-54GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A251LB170.0A0A251LB17_MANES; Uncharacterized protein
STRINGcassava4.1_014204m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-53GATA transcription factor 1