PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G154500.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 198aa    MW: 22056.2 Da    PI: 10.2486
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G154500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.88.5e-20118152135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Manes.03G154500.3.p 118 CQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 152
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-15112162IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.374112148IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-15114176No hitNo description
Gene3DG3DSA:3.30.50.105.4E-15116150IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.14E-14117165No hitNo description
PROSITE patternPS003440118143IPR000679Zinc finger, GATA-type
PfamPF003202.4E-17118152IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEFAEEELEW LSNKDAFPAV ETFVDIISEN PGGLPKQRSP VSVLENSTTS STSNSGNSGT  60
NGSITMDYCW SLQVPVKARS KHHRSRRRDL QGQQCWWSLE NLRKVKPAVT SSTMGRKCQH  120
CGAEKTPQWR AGPLGPKTLC NACGVRYKSG RLVPEYRPAS SPTFRSELHS NSHRKVMEMR  180
KQKLIMGSMV VKAMEKG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G154500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607544.11e-145GATA transcription factor 1-like isoform X1
RefseqXP_021607545.11e-145GATA transcription factor 1-like isoform X2
SwissprotQ8LAU97e-52GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A251LAW31e-145A0A251LAW3_MANES; Uncharacterized protein
STRINGcassava4.1_014204m1e-144(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-51GATA transcription factor 1