PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G167500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 185aa    MW: 20636.5 Da    PI: 6.3436
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G167500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000183557123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + F++   L  H++ H
  Manes.03G167500.1.p 35 YECTFCRRGFTNAQALGGHMNIH 57
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-52360IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.78E-73162No hitNo description
PROSITE profilePS5015711.4483562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGSGKQASSE TSSEENGRQE HAKEDAATTT TKRFYECTFC RRGFTNAQAL GGHMNIHRRD  60
RAKTKQVSAS SSISGKTNED FLNPNHMGPI SSELMNKYPV LEAQREYSMY LHPSEFSYPG  120
QPHGYYHGSD FLVSRHQSLS VNEELWGANL SLQIGSSHSG DNELNKDVPK EDEVDLELRL  180
GHDR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15765RRDRAKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G167500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606302.11e-137zinc finger protein KNUCKLES
TrEMBLA0A2C9W8501e-136A0A2C9W850_MANES; Uncharacterized protein
STRINGcassava4.1_029938m1e-136(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.16e-16C2H2 family protein