PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G176000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 247aa    MW: 28176.6 Da    PI: 9.6941
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G176000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32e-11122228197
                          EEEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EE CS
                   B3   1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfv 80 
                          f+k+lt+sdv    +rl++ k  + ++        ++++ ++++++ +d +g+++++ ++ + ++  yvlt+GWk+F   +gL    Dfv
  Manes.03G176000.1.p 122 FEKQLTSSDVRPDqSRLTMNKADVVRCllpllnreEENPCQGIKVKTYDMQGNEYDMAFKLWASK-VYVLTTGWKNFFMKHGLIeNEDFV 210
                          89********98769999999999999*****998777889******************999986.9****************9567999 PP

                          EEEE-SS.SEE..EEEEE CS
                   B3  81 vFkldgr.sefelvvkvf 97 
                          ++ + ++ ++ +l++ + 
  Manes.03G176000.1.p 211 TIWMFRNfRTDKLCFVIS 228
                          887667666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0059122231IPR003340B3 DNA binding domain
SuperFamilySSF1019363.01E-14122228IPR015300DNA-binding pseudobarrel domain
CDDcd100176.60E-14122227No hitNo description
PfamPF023626.2E-8122230IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-15122228IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEPSHDEKEA AEVLLSFKEA EDLLYFKHEK LDPITAAALE ATKSSKILQG LAGSNHRVSR  60
QQAKPQPQPR PRPQKPAAKP QPRPRPLLEK PAAATLFDTY EPPEIPPVVG LDGLIGKCSK  120
PFEKQLTSSD VRPDQSRLTM NKADVVRCLL PLLNREEENP CQGIKVKTYD MQGNEYDMAF  180
KLWASKVYVL TTGWKNFFMK HGLIENEDFV TIWMFRNFRT DKLCFVISSR RLPIYEPIKR  240
RRGSQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G176000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085562.13e-70putative B3 domain-containing protein At4g03160
TrEMBLA0A2C9W8G30.0A0A2C9W8G3_MANES; Uncharacterized protein
STRINGcassava4.1_027543m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.12e-20B3 family protein