PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G176200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 259aa    MW: 29404.9 Da    PI: 9.4858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G176200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.63.4e-11137244198
                          EEEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EE CS
                   B3   1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfv 80 
                          f+k+lt+sdv    +rl++ k  + ++        ++++ ++++++ +d +g+++++ ++ + ++  yvlt+GWk+F   +gL    Dfv
  Manes.03G176200.1.p 137 FEKQLTSSDVRPDqSRLTMNKADVVRCllpllnreEENPCQGIKVKTYDMQGNEYDMAFKLWASK-VYVLTTGWKNFFIKHGLIeNEDFV 225
                          89********98769999999999999*****998777889******************999986.9****************8567999 PP

                          EEEE-SS.SEE..EEEEE- CS
                   B3  81 vFkldgr.sefelvvkvfr 98 
                          ++ + ++ ++ +l++ + +
  Manes.03G176200.1.p 226 TIWMFRNlQTNKLCFVISS 244
                          9887777777777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-14137243IPR015300DNA-binding pseudobarrel domain
PfamPF023628.2E-8137245IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-15137243IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0079137246IPR003340B3 DNA binding domain
CDDcd100173.95E-14137242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MELSSTEPSS SEPSYDEKEA AEVLLCFKQA EDLLYLKHKK LDPLIAAALE ETKSNKIRQG  60
TKSKKIRQGL AGSNHGVLGQ QAKPQPQPRP EKPAAKPQLR PRLEKPAADT FFDTYEPPEI  120
PPVVGLDGLI GKCSKPFEKQ LTSSDVRPDQ SRLTMNKADV VRCLLPLLNR EEENPCQGIK  180
VKTYDMQGNE YDMAFKLWAS KVYVLTTGWK NFFIKHGLIE NEDFVTIWMF RNLQTNKLCF  240
VISSRRLPIY EPIKRRRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G176200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085562.11e-64putative B3 domain-containing protein At4g03160
TrEMBLA0A2C9WAK80.0A0A2C9WAK8_MANES; Uncharacterized protein
STRINGcassava4.1_032104m1e-171(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.14e-20B3 family protein