PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G192500.4.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 366aa    MW: 39427.5 Da    PI: 8.4446
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G192500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.71.7e-124974227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +++rtG+C yG+rC+F+H++
  Manes.03G192500.4.p 49 DEADCIYYLRTGFCGYGARCRFNHPR 74
                         6799********************96 PP
2zf-CCCH39.69e-1396120327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++++rtGtCk+G++Ck++H++
  Manes.03G192500.4.p  96 QPVCQYYMRTGTCKFGASCKYHHPR 120
                          689********************96 PP
3zf-CCCH35.81.3e-11141166227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C ++ +tG+Ck+G++CkF+H++
  Manes.03G192500.4.p 141 GERECTYYVKTGQCKFGATCKFHHPQ 166
                          789*********************97 PP
4zf-CCCH39.21.2e-12306332127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+++++tG Ck+G++C+++H+p
  Manes.03G192500.4.p 306 PGQPECQYYMKTGDCKFGSSCRYHHPP 332
                          5789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0514775IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-54774IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-104974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-65175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-55374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.90193121IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-793120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-695120IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-1096120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-598120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.633139167IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5139166IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389305333IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6305332IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-10307332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6309333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5311332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDRYGRTQEG SQSDPSPEWT APRPETGIEE GVWQLGLGEG ESGYPERPDE ADCIYYLRTG  60
FCGYGARCRF NHPRDRGAVI GAARAGAGQF PERVGQPVCQ YYMRTGTCKF GASCKYHHPR  120
QGGGSVSPVS LNYYGYPLRQ GERECTYYVK TGQCKFGATC KFHHPQPANL QIPAQSLAPQ  180
VAPVPAPVAA PGLYPTMQSP SVPSTQQYGI VVARPPLLPS SYVQGPYGPM LFSPGVVSYP  240
SWSSYPAPVS PVASPSTQAG VGSGSVYGIT QLSPSAPAYT GIYQPMSTSI GPSSSSQKEH  300
SFPERPGQPE CQYYMKTGDC KFGSSCRYHH PPELIAPKTT VLLSPIGLPM RPVRIPLNQA  360
SHIYC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G192500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607314.10.0zinc finger CCCH domain-containing protein 34-like isoform X3
SwissprotQ6NPN31e-142C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2C9W8W00.0A0A2C9W8W0_MANES; Uncharacterized protein
STRINGcassava4.1_024892m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-118C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]