PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G193600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YB
Protein Properties Length: 141aa    MW: 15765.5 Da    PI: 4.8898
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G193600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.44.7e-5417112297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvtseas+kc++e+rkt+ngdd++wa+a lGf+dy+ pl++yl++yr
  Manes.03G193600.1.p  17 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDVCWAMAALGFDDYAGPLRTYLQRYR 106
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          eleg++
  Manes.03G193600.1.p 107 ELEGDR 112
                          ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-5412132IPR009072Histone-fold
SuperFamilySSF471136.37E-4119131IPR009072Histone-fold
PfamPF008089.6E-282286IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-175068No hitNo description
PROSITE patternPS0068505369IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-176987No hitNo description
PRINTSPR006151.4E-1788106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MVDNIGASAS SEDGGIKEQD RLLPIANVGR IMKQILPPNA KISKEAKETM QECVSEFISF  60
VTSEASEKCR KERRKTVNGD DVCWAMAALG FDDYAGPLRT YLQRYRELEG DRANQEKASN  120
SNNTEEKEEQ SSSYRNNQLH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4516107192Transcription factor HapC (Eurofung)
4g92_B3e-4516107192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G193600.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608716.11e-101nuclear transcription factor Y subunit B-5-like
SwissprotO822481e-57NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2C9WB971e-100A0A2C9WB97_MANES; Uncharacterized protein
STRINGcassava4.1_018746m1e-101(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.16e-60nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]