PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G199300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 260aa    MW: 28942.7 Da    PI: 7.0332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G199300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.1e-2188138155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a+++a+k+++g
  Manes.03G199300.1.p  88 SIYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTYNTAEEAARAYDEAAKRIRG 138
                          57********.**********72....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.80E-3488148No hitNo description
PfamPF008476.3E-1588138IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2388147IPR016177DNA-binding domain
PROSITE profilePS5103223.55189146IPR001471AP2/ERF domain
SMARTSM003802.1E-3789152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-3289147IPR001471AP2/ERF domain
PRINTSPR003671.3E-1190101IPR001471AP2/ERF domain
PRINTSPR003671.3E-11112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MCGGAIISDF VAVKRSRRLN AEDLWSDLDT LSNFLGLDYP NNANKEQIST QLDLELHEKP  60
KLKLNQVEKT EKGSTVMESN KTQRIRKSIY RGIRQRPWGK WAAEIRDPHK GVRVWLGTYN  120
TAEEAARAYD EAAKRIRGDK AKLNFAQSPA ATQAPPLPPQ SKKRCPMMAP AATVQSCSGG  180
AVAAPAQQPY MGVGHEKELL SSDYELKEQI LNLETFLGLE PEMAADQLSG SSCETSESVD  240
LWMLDDLVSH HQNQRWLSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2190145359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2190145662ATERF1
3gcc_A2e-2190145662ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G199300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9146493e-89JQ914649.1 Hevea brasiliensis AP2/ERF super family protein (ERF5) mRNA, complete cds.
GenBankKC5569153e-89KC556915.1 Hevea brasiliensis ethylene-responsive transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606660.10.0ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A2C9WBF20.0A0A2C9WBF2_MANES; Uncharacterized protein
STRINGcassava4.1_014267m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-47ethylene-responsive element binding protein