PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G000600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 384aa    MW: 43138.7 Da    PI: 7.7615
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G000600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.42.9e-49171431128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          + pGfrF+Ptd el+++yLkkk +g++  + evi+ev+i+k+ePwdLp k++ ++++ew+fFs r +ky++g++++rat++gyWkatgk+
  Manes.04G000600.1.p  17 MFPGFRFSPTDVELISFYLKKKFDGDEKCV-EVISEVEICKYEPWDLPaKSIIQSDNEWFFFSARGRKYPNGSQSRRATERGYWKATGKE 105
                          579************************777.99***************767778899********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++v+s ++ ++g+k+tLvf++grapkge+t+W+mhey +
  Manes.04G000600.1.p 106 RNVKS-GSVVIGTKRTLVFHTGRAPKGERTEWIMHEYCM 143
                          *****.9******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-556158IPR003441NAC domain
PROSITE profilePS5100552.20317159IPR003441NAC domain
PfamPF023652.8E-2419142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAGVSKETQL SIEASSMFPG FRFSPTDVEL ISFYLKKKFD GDEKCVEVIS EVEICKYEPW  60
DLPAKSIIQS DNEWFFFSAR GRKYPNGSQS RRATERGYWK ATGKERNVKS GSVVIGTKRT  120
LVFHTGRAPK GERTEWIMHE YCMDGKSQDS LVVCRLRRNV EFRPNDNSNR SSLNRRQLSV  180
SEGGLDRAGT SEGEKTAECS RKCSSSHDSH SIEQLDSASE SEQKLSNEAL LAESSSRPQD  240
SDNQDDFYAD ILKDDIVKLD ETSLSAILEF PVIASKPEAQ IEVQQPPELI ASQSLPLQSI  300
PMQGTANRRI KLDKKTHDVS NAKTSEESPK CVLDFFSVRR GNQKLISRIF IILSLLVLLL  360
SLLGGFQQVK RITYGALYRA LWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4031562165Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G000600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052300.0KR605230.1 Manihot esculenta NAC transcription factors 92 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609917.10.0NAC domain-containing protein 89
RefseqXP_021609918.10.0NAC domain-containing protein 89
RefseqXP_021609919.10.0NAC domain-containing protein 89
TrEMBLA0A0M5JKF00.0A0A0M5JKF0_MANES; NAC transcription factors 92
STRINGcassava4.1_032848m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-92NTM1-like 8
Publications ? help Back to Top
  1. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]