PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G002000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 244aa    MW: 27974.3 Da    PI: 6.7988
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G002000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.25.1e-4741351128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                          lppG+rF Pt+eelv++yL++k+egk+ el++vi+ ++iy+ ePw+Lpk    ++++++++w+fF++r++++a+g r+nr+t++gyWkat
  Manes.04G002000.1.p   4 LPPGLRFYPTEEELVSFYLHNKLEGKRQELDRVIPVINIYNQEPWNLPKlageRCRGDTEQWFFFTPRQEREARGGRPNRTTETGYWKAT 93 
                          79****************************999***************656766666888****************************** PP

                  NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          g+   v+s++++++g+kkt+vfykg+ap g+kt+W m+eyr+
  Manes.04G002000.1.p  94 GSPGYVYSSDNRVIGVKKTMVFYKGKAPAGRKTKWKMNEYRA 135
                          ****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-493160IPR003441NAC domain
PROSITE profilePS5100549.2864162IPR003441NAC domain
PfamPF023653.9E-245134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEVLPPGLRF YPTEEELVSF YLHNKLEGKR QELDRVIPVI NIYNQEPWNL PKLAGERCRG  60
DTEQWFFFTP RQEREARGGR PNRTTETGYW KATGSPGYVY SSDNRVIGVK KTMVFYKGKA  120
PAGRKTKWKM NEYRAIEEVA DSYNTAVPML RHEFSLCRVY VISGSFRAFD RRPLEAAAID  180
NRLVRNTATS AQDTRIVDNT SSSETSYSGG DHAYPSGAEG SANWEMVEDL VQPLWDWEQL  240
NWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-35416017163NO APICAL MERISTEM PROTEIN
1ut4_B2e-35416017163NO APICAL MERISTEM PROTEIN
1ut7_A2e-35416017163NO APICAL MERISTEM PROTEIN
1ut7_B2e-35416017163NO APICAL MERISTEM PROTEIN
3swm_A2e-35416020166NAC domain-containing protein 19
3swm_B2e-35416020166NAC domain-containing protein 19
3swm_C2e-35416020166NAC domain-containing protein 19
3swm_D2e-35416020166NAC domain-containing protein 19
3swp_A2e-35416020166NAC domain-containing protein 19
3swp_B2e-35416020166NAC domain-containing protein 19
3swp_C2e-35416020166NAC domain-containing protein 19
3swp_D2e-35416020166NAC domain-containing protein 19
4dul_A2e-35416017163NAC domain-containing protein 19
4dul_B2e-35416017163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G002000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051740.0KR605174.1 Manihot esculenta NAC transcription factors 36 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609372.10.0NAC domain-containing protein 90
SwissprotQ9FMR35e-99NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0M4G3P60.0A0A0M4G3P6_MANES; NAC transcription factors 36
STRINGcassava4.1_014914m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-101NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]