PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G016700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

TCP

Protein Properties

Length: 241aa MW: 26058.5 Da PI: 9.0043

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G016700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	81.3	2.5e-25	44	153	4	102
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec..eaessss 80 + r++++h kv+gR+ R+R++a+caar+F+L++eLG+ + ++tieWLl ++ t t +++s+ +++ s+ Manes.04G016700.1.p 44 NRLRSKDRHKKVEGRGTRIRIPADCAARIFQLTRELGHRTSGETIEWLLYHVPASDFPTTTTaastcsdtiavTANSS--LhvMPSATSN 131 5789*********************************************99977766666664444444333211111..1222333333 PP TCP 81 sasnsssgkaaksaakskksqk 102 +asnsss++ +++++ sk++++ Manes.04G016700.1.p 132 AASNSSSSSPCSKQKISKSKKT 153 3333333333333332222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.5E-21	48	155	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	18.361	48	102	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MVSQEIPIDP SQFFTNFSAT QQLLPPNPTA ATAPKTQQLL PSLNRLRSKD RHKKVEGRGT 60 RIRIPADCAA RIFQLTRELG HRTSGETIEW LLYHVPASDF PTTTTAASTC SDTIAVTANS 120 SLHVMPSATS NAASNSSSSS PCSKQKISKS KKTNTPLHVS LNSCASVSGS SFPASNSLDA 180 VLLSTPIRRE SEIVRMPMAV VEPERKKEDL RGEFDLFPGA NGSLPNMSFT SLLMQLERED 240 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G016700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021609481.1	1e-176	transcription factor TCP11-like
Refseq	XP_021609482.1	1e-176	transcription factor TCP11-like
TrEMBL	A0A2C9W033	1e-175	A0A2C9W033_MANES; Uncharacterized protein
STRING	cassava4.1_022504m	1e-176	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22597	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-22	TCP family protein

Link Out ? help Back to Top
Phytozome	Manes.04G016700.1.p