PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G016800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

TCP

Protein Properties

Length: 156aa MW: 16551.8 Da PI: 10.0018

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G016800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102	1e-31	18	98	2	81
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 +k ++++++h+kv+gRdRR+Rl+ caar+F+L+ eLG +d++tieWLl++a+p+i+++tg++ +a+ + ++sss+s Manes.04G016800.1.p 18 KPKPKPKKDRHSKVNGRDRRIRLPTICAARIFQLTWELGNRTDGETIEWLLRMAEPSIIAATGNGIAPANPSpPPASSSNS 98 57999***********************************************************99999888633333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-27	24	99	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.671	24	78	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MTLPSSSPNT STTSEKAKPK PKPKKDRHSK VNGRDRRIRL PTICAARIFQ LTWELGNRTD 60 GETIEWLLRM AEPSIIAATG NGIAPANPSP PPASSSNSSF INPLSSGRLP MGCLGFSGGG 120 VIFPCEARVA VPETQGIVVD NNDQSKQEQA FPAII*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269\|PubMed:19286557}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G016800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021610551.1	1e-110	transcription factor TCP23-like
Swissprot	Q9FMX2	2e-29	TCP7_ARATH; Transcription factor TCP7
Swissprot	Q9FTA2	2e-29	TCP21_ARATH; Transcription factor TCP21
TrEMBL	A0A2C9W024	1e-109	A0A2C9W024_MANES; Uncharacterized protein
STRING	cassava4.1_028688m	1e-109	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-27	TCP family protein

Link Out ? help Back to Top
Phytozome	Manes.04G016800.1.p

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Ng DW,Chen HH,Chen ZJ Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Sci Rep, 2017. 7: p. 45087 [PMID:28345627] Lee CM, et al. Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol., 2018. 177(3): p. 1170-1186 [PMID:29794020]