PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G019800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 708aa    MW: 78439.8 Da    PI: 8.2864
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G019800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.6e-23112213199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF 
  Manes.04G019800.1.p 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHGQIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL 199
                          89****************************996555555..8************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++ l+v+++r+
  Manes.04G019800.1.p 200 --KAENGDLFVGIRRA 213
                          ..5599999****997 PP
2Auxin_resp116.22.8e-38272355183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ a+++++FevvY+Prast+eF+vk+++v++a+++++  GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Manes.04G019800.1.p 272 AAELAANGQPFEVVYYPRASTPEFCVKASSVMAAMRIQWRSGMRFKMAFETEDSSRISWfMGTVTSVQVSDPIRWPNSPWRLLQ 355
                          68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-29104218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-38106224IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-20111212No hitNo description
PROSITE profilePS5086312.901112214IPR003340B3 DNA binding domain
PfamPF023621.8E-21112213IPR003340B3 DNA binding domain
SMARTSM010192.2E-19112214IPR003340B3 DNA binding domain
PfamPF065071.6E-33272355IPR010525Auxin response factor
PROSITE profilePS5174515.542594676IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MKELEKSLDP QLWQACSGSM VHIPPVNCRV FYFPQGHAEH SLSPVDFSSS PRIPAVILCR  60
ISAVKYLADL ETDEVYAKIS LVPLPNRELD FGEEMGICDN SNVKGTEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVIAKDVHGQ IWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLK AENGDLFVGI RRAKRGNGPE SSSPPSGWAT NASFVKLYGG  240
FSLFQKEDEN KGTRNGGLKG RGKVRPGEVM EAAELAANGQ PFEVVYYPRA STPEFCVKAS  300
SVMAAMRIQW RSGMRFKMAF ETEDSSRISW FMGTVTSVQV SDPIRWPNSP WRLLQVTWDE  360
PDLLQNVKRV SPWLIELVSN MPVINLLPFS PQRKKLRLSQ QLDFPLNGQF QWPSFSGNPL  420
GPSRPFCCLS DNTPVGIQGA RHAQFGISLS ALQLNNKLQS GQFLSSFQQF NSHSRISESF  480
MKGHTNSYEN LSCSLTIGNS NKNSEKSESD SVKGHHFLLF GQPILTEQQI SHSYSTDGVS  540
QVLNGKFSSA ESPEKPKSCD VLRYAPEKQT SPEKSTSTGL SWQSLHATET SLDAGLCKVF  600
LESEDVGRTL DLSILGSYEE LHNRLTKMFG IDRSYSFSCV LYQDATGAVK QMGDEPFSVF  660
TKTAKMLTIQ MNLTSSDNIG RPWITGMRNT ENGLESSNKT GPLSIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-80837651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G019800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609302.10.0auxin response factor 10-like
RefseqXP_021609304.10.0auxin response factor 10-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2C9VYY00.0A0A2C9VYY0_MANES; Auxin response factor
STRINGcassava4.1_002668m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]