PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G022800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NF-YC

Protein Properties

Length: 228aa MW: 25900.3 Da PI: 9.8877

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G022800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	41.3	3.3e-13	121	209	11	99
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e+ +d ++P+arik+i+k+++ ++s ++ l+ ka e fi ++ ++ + +++ l +++av++ fdfl d vp++ Manes.04G022800.1.p 121 EDGEDGTMCRFPMARIKRIMKSEDPGLQLSQDVVFLVNKATEKFIEQFCEEAYGCSVRDRKNYLAYKHLSTAVSEQRRFDFLSDFVPEK 209 5556666779************99**********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.09E-18	122	208	IPR009072	Histone-fold
Pfam	PF00808	9.2E-16	130	193	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.4E-23	131	208	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MASIEKSKNE EEQKKKKKKN KEGAVTSKSP IKKTLTKSPK QEGEKEKKKK KKQQHSKTSN 60 GTISEPPEVL IIPSSSCDSQ ESQDDDREEI AKRIEPSNRS NKSSKPVKTN KRKEKAEADN 120 EDGEDGTMCR FPMARIKRIM KSEDPGLQLS QDVVFLVNKA TEKFIEQFCE EAYGCSVRDR 180 KNYLAYKHLS TAVSEQRRFD FLSDFVPEKL KAVDALAQRN LVENREG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G022800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021609413.1	1e-164	protein FAM133B
TrEMBL	A0A2C9VZ11	1e-163	A0A2C9VZ11_MANES; Uncharacterized protein
STRING	cassava4.1_015531m	1e-164	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12016	30	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-36	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Manes.04G022800.1.p