PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G043100.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 255aa MW: 29319.7 Da PI: 5.4659

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G043100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.2	3.7e-25	76	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++ ++++ + ++tr gC+a++++ +++ kw+vtk+++eH+H+ Manes.04G043100.1.p 76 EFYISYGRRTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVYRKDR-VlpPPPVTREGCQAMIRLALRDGVKWVVTKFVKEHTHK 164 6****************************************99883333.234899****************************** PP FAR1 89 la 90 l+ Manes.04G043100.1.p 165 LM 166 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-22	76	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MDSQSGHGFG SDESDLDMQA EAYECGSIDD ELPNNLDFCT SEDDSISEQS VGLPINSEGL 60 EPYVGMEFKS RDEAREFYIS YGRRTGFTVR IHHNRRSRVN NQVIGQDFVC SKEGFRAKKY 120 VYRKDRVLPP PPVTREGCQA MIRLALRDGV KWVVTKFVKE HTHKLMSPNK VPWRGSGKHL 180 ISEDEKDKRI RELSLELYNE RQKCKRRCAA YEEQLNMILK DLEQHTEHVS KKVADVVQSI 240 REIEEEQTDD SDDG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G043100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021610461.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_021610462.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
TrEMBL	A0A2C9VZJ4	0.0	A0A2C9VZJ4_MANES; Uncharacterized protein
STRING	cassava4.1_014469m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	5e-43	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Manes.04G043100.1.p