PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G043300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 245aa MW: 28174.4 Da PI: 6.9521

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G043300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.3	8.3e-26	71	162	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r+ +++k ++ ++r+ tr gC+a+l++ ++ gkw ++ +++eH+Hel Manes.04G043300.1.p 71 EFYEMYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAGKSTKrENGVFSSRPATREGCNAMLRIAAKDGGKWIIYGFVKEHSHEL 160 6**************************************99988823344569********************************9 PP FAR1 90 ap 91 +p Manes.04G043300.1.p 161 NP 162 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.6E-23	71	162	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MASTSSHQFH SNGNYRRWLD ETFDGPETTE DELSDNLDGN DNIVRQSVQN FHIALEPFIG 60 MEFDSAEDAR EFYEMYGRRM GFTIRNNRTR RSLKDNSIIG REFVCSKEGF RAGKSTKREN 120 GVFSSRPATR EGCNAMLRIA AKDGGKWIIY GFVKEHSHEL NPIKIPPRRS HRIAFNEDGK 180 DLKIRELSTE LHREKKKSAA YQEQLQIVLK CIEEHTQRLS LKIEAVSNKV RELECEEPDS 240 SDSN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G043300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021610463.1	0.0	protein FAR1-RELATED SEQUENCE 4-like
TrEMBL	A0A2C9W1Q7	0.0	A0A2C9W1Q7_MANES; Uncharacterized protein
STRING	cassava4.1_014879m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15811	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-48	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Manes.04G043300.1.p