PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G064600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

YABBY

Protein Properties

Length: 195aa MW: 21617.4 Da PI: 8.3116

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G064600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	237.3	3.3e-73	2	161	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 +++s se+vCyv+CnfCntilavsvPs+ lf +vtvrCGhC++llsvn+ + q+ + ++ ++++ ++ + +++ ++ s Manes.04G064600.1.p 2 SMDSVSERVCYVHCNFCNTILAVSVPSSNLFAIVTVRCGHCANLLSVNMGSSLQTFPLQDP--------QHKQSQKVHLSTEDLNKDCGS 83 67899**************************************************9995........222222222222333333344 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+ ++++ +++ +d+e pr+pp +rPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Manes.04G064600.1.p 84 SSKCNKVTAFESGDDHEPPRMPP-VRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 161 444455556689999**99.8**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-74	6	161	IPR006780	YABBY protein
SuperFamily	SSF47095	2.62E-8	106	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.8E-5	109	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MSMDSVSERV CYVHCNFCNT ILAVSVPSSN LFAIVTVRCG HCANLLSVNM GSSLQTFPLQ 60 DPQHKQSQKV HLSTEDLNKD CGSSSKCNKV TAFESGDDHE PPRMPPVRPP EKRQRVPSAY 120 NRFIKEEIQR IKASNPDISH REAFSTAAKN WAHFPHIHFG LKLEGNKHAK VDHQTFAGEG 180 THKSTGFYDI NGSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G064600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021609666.1	1e-145	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	8e-81	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A2C9W080	1e-144	A0A2C9W080_MANES; Uncharacterized protein
STRING	cassava4.1_016957m	1e-114	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-74	YABBY family protein

Link Out ? help Back to Top
Phytozome	Manes.04G064600.1.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]