PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.04G064600.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

YABBY

Protein Properties

Length: 192aa MW: 21223.9 Da PI: 8.0963

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.04G064600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	227.2	4.3e-70	2	158	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 +++s se+vCyv+CnfCntilavsvPs+ lf +vtvrCGhC++llsvn+ + q+ + ++ + ++ + ++e+l++ s Manes.04G064600.2.p 2 SMDSVSERVCYVHCNFCNTILAVSVPSSNLFAIVTVRCGHCANLLSVNMGSSLQTFPLQDP--------QSQKVHLSTEDLNKDC---GS 80 67899***********************************************9999985........3444444444444333...33 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+ ++++ +++ +d+e pr+pp +rPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Manes.04G064600.2.p 81 SSKCNKVTAFESGDDHEPPRMPP-VRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 158 334444445678999*999.8**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.7E-74	6	158	IPR006780	YABBY protein
SuperFamily	SSF47095	2.49E-8	103	151	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.7E-5	106	152	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MSMDSVSERV CYVHCNFCNT ILAVSVPSSN LFAIVTVRCG HCANLLSVNM GSSLQTFPLQ 60 DPQSQKVHLS TEDLNKDCGS SSKCNKVTAF ESGDDHEPPR MPPVRPPEKR QRVPSAYNRF 120 IKEEIQRIKA SNPDISHREA FSTAAKNWAH FPHIHFGLKL EGNKHAKVDH QTFAGEGTHK 180 STGFYDINGS L*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.04G064600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021609667.1	1e-143	putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	2e-81	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A2C9W092	1e-142	A0A2C9W092_MANES; Uncharacterized protein
STRING	cassava4.1_016957m	1e-116	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-74	YABBY family protein

Link Out ? help Back to Top
Phytozome	Manes.04G064600.2.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]