PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G082700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family BBR-BPC
Protein Properties Length: 316aa    MW: 35212.9 Da    PI: 9.7724
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G082700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3512.6e-10713151301
            GAGA_bind   1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaern 71 
                          mdd g+++  r k  yy+                ++++l   +++++m+++aerda+i+ern+al+ekk+a+ +rd+a++qrdkalaer+
  Manes.04G082700.1.p   1 MDDGGQHQsgRYKIdYYKvansawslmppphlkeQNNALV--MNKKIMAILAERDAAIQERNMALAEKKEALDARDEALQQRDKALAERD 88 
                          899998877898888999********98877753335555..99********************************************** PP

            GAGA_bind  72 kalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
                          kal+erdn+l+a++++en +++a+  + ++ +g k i +     +++   +a +  e+++++++pi +   e+ + +++k+++++k p +
  Manes.04G082700.1.p  89 KALMERDNALAAIQYRENDVNFAM--NNESQRGLKRIPHPVY--KSNAVVEALNSGETHITDTFPIANVSAESLKLRQTKRSKENK-PAS 173
                          ******************987766..5566788899987766..555555677778***********9999999988888555444.444 PP

            GAGA_bind 162 kkakkkkkksekskkkvkkesad..erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249
                          +ka+k+ +k++k  ++ ++e+a+  ++ k e++s+d +ln v++De+t+PvPvCsCtGa++qCYkWGnGGWqS+CCttt+S yPLP++++
  Manes.04G082700.1.p 174 SKASKAPRKGNKVAEDLNREGASdgKKFKVEWDSQDAGLNLVNFDETTIPVPVCSCTGAPHQCYKWGNGGWQSSCCTTTMSSYPLPQMPN 263
                          444443333444444444444333588*************************************************************** PP

            GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          +r+aRi+grKmS+++f+klL +LaaeG+dls+p+DLk++WA+HGtn+++ti+
  Manes.04G082700.1.p 264 KRHARIGGRKMSGSVFRKLLGRLAAEGHDLSTPLDLKEYWARHGTNRYITIK 315
                          ***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.7E-1571315IPR010409GAGA-binding transcriptional activator
PfamPF062171.4E-991315IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDDGGQHQSG RYKIDYYKVA NSAWSLMPPP HLKEQNNALV MNKKIMAILA ERDAAIQERN  60
MALAEKKEAL DARDEALQQR DKALAERDKA LMERDNALAA IQYRENDVNF AMNNESQRGL  120
KRIPHPVYKS NAVVEALNSG ETHITDTFPI ANVSAESLKL RQTKRSKENK PASSKASKAP  180
RKGNKVAEDL NREGASDGKK FKVEWDSQDA GLNLVNFDET TIPVPVCSCT GAPHQCYKWG  240
NGGWQSSCCT TTMSSYPLPQ MPNKRHARIG GRKMSGSVFR KLLGRLAAEG HDLSTPLDLK  300
EYWARHGTNR YITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G082700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611000.10.0protein BASIC PENTACYSTEINE4 isoform X3
RefseqXP_021611001.10.0protein BASIC PENTACYSTEINE4 isoform X3
RefseqXP_021611002.10.0protein BASIC PENTACYSTEINE4 isoform X3
RefseqXP_021611003.10.0protein BASIC PENTACYSTEINE4 isoform X3
RefseqXP_021611004.10.0protein BASIC PENTACYSTEINE4 isoform X3
RefseqXP_021611005.10.0protein BASIC PENTACYSTEINE4 isoform X3
SwissprotQ8S8C61e-136BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A251L2590.0A0A251L259_MANES; Uncharacterized protein
STRINGcassava4.1_012340m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-138basic pentacysteine 4