PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G082700.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family BBR-BPC
Protein Properties Length: 311aa    MW: 34770.4 Da    PI: 9.7724
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G082700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind352.31.1e-10713101301
            GAGA_bind   1 mdddgsre..rnkg.yye...........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalve 76 
                          mdd g+++  r k  yy+           ++++l   +++++m+++aerda+i+ern+al+ekk+a+ +rd+a++qrdkalaer+kal+e
  Manes.04G082700.2.p   1 MDDGGQHQsgRYKIdYYKwslmppphlkeQNNALV--MNKKIMAILAERDAAIQERNMALAEKKEALDARDEALQQRDKALAERDKALME 88 
                          89999887799888899999998877753335555..99*************************************************** PP

            GAGA_bind  77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakk 166
                          rdn+l+a++++en +++a+  + ++ +g k i +     +++   +a +  e+++++++pi +   e+ + +++k+++++k p ++ka+k
  Manes.04G082700.2.p  89 RDNALAAIQYRENDVNFAM--NNESQRGLKRIPHPVY--KSNAVVEALNSGETHITDTFPIANVSAESLKLRQTKRSKENK-PASSKASK 173
                          *************987766..5566788899987766..555555677778***********9999999988888555444.44444444 PP

            GAGA_bind 167 kkkksekskkkvkkesad..erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaR 254
                          + +k++k  ++ ++e+a+  ++ k e++s+d +ln v++De+t+PvPvCsCtGa++qCYkWGnGGWqS+CCttt+S yPLP+++++r+aR
  Manes.04G082700.2.p 174 APRKGNKVAEDLNREGASdgKKFKVEWDSQDAGLNLVNFDETTIPVPVCSCTGAPHQCYKWGNGGWQSSCCTTTMSSYPLPQMPNKRHAR 263
                          3333444444444444333588******************************************************************** PP

            GAGA_bind 255 iagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          i+grKmS+++f+klL +LaaeG+dls+p+DLk++WA+HGtn+++ti+
  Manes.04G082700.2.p 264 IGGRKMSGSVFRKLLGRLAAEGHDLSTPLDLKEYWARHGTNRYITIK 310
                          **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062173.5E-1001310IPR010409GAGA-binding transcriptional activator
SMARTSM012264.5E-1561310IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDDGGQHQSG RYKIDYYKWS LMPPPHLKEQ NNALVMNKKI MAILAERDAA IQERNMALAE  60
KKEALDARDE ALQQRDKALA ERDKALMERD NALAAIQYRE NDVNFAMNNE SQRGLKRIPH  120
PVYKSNAVVE ALNSGETHIT DTFPIANVSA ESLKLRQTKR SKENKPASSK ASKAPRKGNK  180
VAEDLNREGA SDGKKFKVEW DSQDAGLNLV NFDETTIPVP VCSCTGAPHQ CYKWGNGGWQ  240
SSCCTTTMSS YPLPQMPNKR HARIGGRKMS GSVFRKLLGR LAAEGHDLST PLDLKEYWAR  300
HGTNRYITIK *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G082700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611006.10.0protein BASIC PENTACYSTEINE4 isoform X4
SwissprotQ8S8C61e-133BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A251L2F50.0A0A251L2F5_MANES; Uncharacterized protein
STRINGcassava4.1_012340m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-135basic pentacysteine 4