PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G085300.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family DBB
Protein Properties Length: 251aa    MW: 28062.6 Da    PI: 7.0195
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G085300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.41.2e-073465435
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                          +C+ ++  e++ fC  ++  lC+ C  + H+
  Manes.04G085300.2.p 34 IRCDVCDMDEASVFCSADEAALCDACDRHVHH 65
                         68******99*******************974 PP
2zf-B_box25.52.7e-0885122237
             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 
                          + + C+ ++e ++ lfC++++  lC++C   +H+   H
  Manes.04G085300.2.p  85 QSPLCDVCQERRAFLFCQEDRAILCRECDIPIHEVndH 122
                          6789***************************9943443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.4E-83178IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7083178IPR000315B-box-type zinc finger
PfamPF006438.7E-63365IPR000315B-box-type zinc finger
CDDcd000212.77E-53464No hitNo description
SMARTSM003362.0E-1384131IPR000315B-box-type zinc finger
PROSITE profilePS5011910.39584131IPR000315B-box-type zinc finger
PfamPF006431.1E-685126IPR000315B-box-type zinc finger
CDDcd000211.30E-887131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAMFSLTSSK KNYYNNHSAT CTAKDTIREK RMKIRCDVCD MDEASVFCSA DEAALCDACD  60
RHVHHANKLA SKHLRFSLLH PSSKQSPLCD VCQERRAFLF CQEDRAILCR ECDIPIHEVN  120
DHMKKHNRFL LTGVKLSASS SLHPRSSSSN SCNTNMNTNG KKIPQQLHLH NPCSFSDEII  180
SSPSVERPSP SLANQSPNSD NISLSTSSIS EYLETLPGWR VDDFLEPSMA AHDGFCKGII  240
VETHEHYPFC *
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G085300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609780.10.0B-box zinc finger protein 20-like isoform X2
SwissprotQ0IGM72e-68BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A2C9W3850.0A0A2C9W385_MANES; Uncharacterized protein
STRINGcassava4.1_027185m1e-145(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.13e-57DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]