PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G105000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 180aa    MW: 20194.4 Da    PI: 7.6965
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G105000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-17755254
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         +y+GVr+++ +g+Wv+eIr+p+    ++r++lg+f +ae Aaka+++a++ + 
  Manes.04G105000.1.p  7 RYRGVRQRH-WGSWVSEIRHPVL---KTRIWLGTFESAEHAAKAYDEAARLMC 55
                         69******9.**********744...5**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.33E-32666No hitNo description
SMARTSM003801.8E-38770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-33764IPR001471AP2/ERF domain
PfamPF008478.9E-11756IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-20766IPR016177DNA-binding domain
PROSITE profilePS5103220.692764IPR001471AP2/ERF domain
PRINTSPR003673.5E-10819IPR001471AP2/ERF domain
PRINTSPR003673.5E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MTRQQQRYRG VRQRHWGSWV SEIRHPVLKT RIWLGTFESA EHAAKAYDEA ARLMCGPKAR  60
TNFPYNPNEP QSTSSKHFSA TLAAKLHKCH LASLQATNKN VIKQTHEQPQ PNPFATSNGI  120
AGKSAESGST WQEGKWVGEE SEVGNSQQQE KALEDHHIEQ MIEELLDYGS MEFCSVSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-16868667ATERF1
3gcc_A3e-16868667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G105000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611188.11e-133ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-67ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2C9W1D31e-132A0A2C9W1D3_MANES; Uncharacterized protein
STRINGcassava4.1_029658m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-51ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]