PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G132800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GATA
Protein Properties Length: 326aa    MW: 36354.3 Da    PI: 6.8265
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G132800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24.2e-17220254135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Manes.04G132800.1.p 220 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 254
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.9E-8219306IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.569214250IPR000679Zinc finger, GATA-type
SMARTSM004018.4E-16214264IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.5E-14218252IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.71E-14218277No hitNo description
CDDcd002021.85E-12219266No hitNo description
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
PfamPF003207.8E-15220254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEVPDFFIGG HYSGGAAAEF LPEKRISEQK PGDHFAVDDL LDFPNEDDAT MTDCFFDNIT  60
KKCAVTTDSS TFTSNDSSNS SISGNHVGYR SFDDSQFSSE LCVPYDDLAE LEWLSNFVED  120
SFSTEQNLQA NFHMISGSKS PTPESSSSES HPESSLRNLN NPMFQPETPL PGKARSKRSR  180
AAPCDWSTRL LHLSPVTKPF SKKQGNHNPN PGTETPVRKC LHCAAEKTPQ WRTGPMGPKT  240
LCNACGVRYK SGRLVPEYRP AASPTFVSTK HSNSHRKVLE LRRQKELHMA QQEQFLHQRS  300
IFGLSNGSDD FFIHHHSGPN FRHMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G132800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611068.10.0GATA transcription factor 9-like
SwissprotO826322e-78GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A2C9W2820.0A0A2C9W282_MANES; GATA transcription factor
STRINGcassava4.1_034054m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-73GATA transcription factor 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]