PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G142600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YA
Protein Properties Length: 260aa    MW: 28834.3 Da    PI: 9.2226
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G142600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.86.4e-32125181158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          dep++VNaKQy++Il+RR  Rakle+++kl +k+rkpylheSRh hAl+R+Rg+gGrF
  Manes.04G142600.1.p 125 DEPIFVNAKQYNAILRRRRYRAKLEAQNKL-IKTRKPYLHESRHLHALKRARGCGGRF 181
                          79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.4E-36123184IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.997124184IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.6E-26126181IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-21127149IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860129149IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.0E-21158181IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGVLQQNFHG AKKLTFQFQD QDSSSTQSTG QSYPQVANIG EGLNDIYGKA EGGHTKLAPS  60
MGTQDFIFPS QVDYSQSIAR FPVHFVEPYF GGLLAAYGQQ AMIHHPHMYG MASSRVPLPP  120
ELTKDEPIFV NAKQYNAILR RRRYRAKLEA QNKLIKTRKP YLHESRHLHA LKRARGCGGR  180
FLNVKKHVDS DKATGSAELH SAGNMSESEV HQPENHRDGA STPSCSDITS ASNSDDIFQQ  240
PEFMFSGYHS HIVGTMQGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18125185262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G142600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611016.10.0nuclear transcription factor Y subunit A-3-like
RefseqXP_021611017.10.0nuclear transcription factor Y subunit A-3-like
SwissprotQ93ZH29e-59NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A2C9W4M50.0A0A2C9W4M5_MANES; Uncharacterized protein
STRINGcassava4.1_014256m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-60nuclear factor Y, subunit A3