PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.04G164200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 479aa    MW: 53747.8 Da    PI: 6.1654
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.04G164200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.51.3e-138464701374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsP 89 
                          l++lLl+cA++v++g+ e+a+  L+++s+las dgd+mqR+aayfteALa r++r  +++l +al+ +++s   +seel +++lf+e++P
  Manes.04G164200.1.p  46 LIHLLLACANHVAAGSVENANISLEQISHLASADGDTMQRIAAYFTEALADRILRkGWPGLHRALTFTKKS--LVSEELLVQRLFFELFP 133
                          689****************************************************88******99999887..7**************** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                          +lk++++++NqaI ea+ege++vHiiD++  +++QW+ Llq+L++Rpegpp+lRiTg+++    +ke l +++ rL++ Ae+l++pf+fn
  Manes.04G164200.1.p 134 FLKLAYVITNQAIIEAMEGEKMVHIIDLNSFEPAQWIDLLQTLSARPEGPPHLRITGIHE----QKEVLDQMALRLTEEAEKLDIPFQFN 219
                          ************************************************************....9************************* PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrll....................................................... 214
                          + ++++ledl++e+Lrvk+gEalaV++vlqlh+ll                                                       
  Manes.04G164200.1.p 220 P-IVSKLEDLDIESLRVKTGEALAVSSVLQLHSLLavddeilkgnspsasknpnpshfqralqinknkrtlgellekdlvhvygaspdsa 308
                          *.7999*********************************************************************************999 PP

                 GRAS 215 ......desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                                + s     +  ++L+++++lsPk++v++eqe++hn+ +++er++eal++y+alfd+le++++r+s er+kvE++l+g+ei+n++
  Manes.04G164200.1.p 309 lsplslAPSP----KMGSFLSALWGLSPKLMVITEQESNHNGFTLMERVTEALNFYAALFDCLESTVSRASVERQKVEKMLFGEEIKNII 394
                          7654433333....4666************************************************************************ PP

                 GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          aceg++r+erhe+lekW  rle aGF+ vpls++   qa++ll+ ++ dgy+++ee+g+lv++W++rpL+svSaWr
  Manes.04G164200.1.p 395 ACEGTDRKERHEKLEKWILRLELAGFGRVPLSYHGILQASRLLQSYGYDGYKIKEENGCLVICWHSRPLFSVSAWR 470
                          ***************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.60420450IPR005202Transcription factor GRAS
PfamPF035144.6E-13646470IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAQDDGASSV TSSPLQFFPW MSLSPGYGSP YPWLRELKSE ERGLYLIHLL LACANHVAAG  60
SVENANISLE QISHLASADG DTMQRIAAYF TEALADRILR KGWPGLHRAL TFTKKSLVSE  120
ELLVQRLFFE LFPFLKLAYV ITNQAIIEAM EGEKMVHIID LNSFEPAQWI DLLQTLSARP  180
EGPPHLRITG IHEQKEVLDQ MALRLTEEAE KLDIPFQFNP IVSKLEDLDI ESLRVKTGEA  240
LAVSSVLQLH SLLAVDDEIL KGNSPSASKN PNPSHFQRAL QINKNKRTLG ELLEKDLVHV  300
YGASPDSALS PLSLAPSPKM GSFLSALWGL SPKLMVITEQ ESNHNGFTLM ERVTEALNFY  360
AALFDCLEST VSRASVERQK VEKMLFGEEI KNIIACEGTD RKERHEKLEK WILRLELAGF  420
GRVPLSYHGI LQASRLLQSY GYDGYKIKEE NGCLVICWHS RPLFSVSAWR FRGMVERF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-56304722380Protein SCARECROW
5b3h_D3e-56304722380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.04G164200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052780.0KM405278.1 Jatropha curcas GRAS23 protein (GRAS23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611331.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2C9W3130.0A0A2C9W313_MANES; Uncharacterized protein
STRINGcassava4.1_006715m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]