PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G005300.4.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 477aa    MW: 53560.9 Da    PI: 6.2872
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G005300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.57.8e-34121351128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp+G rFhP+deelv++yLk+k  g+++   + i+ev++++++P+dLp   + ++++k wyfF+ r  ++++g +++r++k+gyWk tg 
  Manes.05G005300.4.p  12 LPVGWRFHPSDEELVDYYLKRKRLGHPIYGLD-ISEVQVCDYDPRDLPgLsMNNSRDKVWYFFCLRLYHNNRG-QAKRKAKDGYWKGTGD 99 
                          799************************98855.***************6434455888********9987666.56666799******** PP

                  NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++v+ + ++e++g+k+tLvf+   +pk   t+Wv+hey+ 
  Manes.05G005300.4.p 100 LRSVTPEdSDEEIGTKRTLVFH---NPK--ATQWVIHEYEY 135
                          *****9867788**********...455..79*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-397154IPR003441NAC domain
PROSITE profilePS5100537.36712155IPR003441NAC domain
PfamPF023658.0E-2313134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MTCPPQSDSQ NLPVGWRFHP SDEELVDYYL KRKRLGHPIY GLDISEVQVC DYDPRDLPGL  60
SMNNSRDKVW YFFCLRLYHN NRGQAKRKAK DGYWKGTGDL RSVTPEDSDE EIGTKRTLVF  120
HNPKATQWVI HEYEYTAALN LPTKGDYVLC KLKISKNKKK ASKKDEKAEP DSKKTRPNKK  180
SRKSESNGNL ASASASTSKN RKLEGMTTNS AYGEGEPNSL MILDLENQNL NTMASISTYN  240
KDEMSSLMTS NFENGYYKRA IVSTCNKGET SCPMASDLEN HCPEEMTAMS SYKKVNPSCP  300
RASVLENLSP NEITSLSTNS KGDTSFFRTC DIENKKSDAF AKVKSIDLVT WDFEKQNPTK  360
NIDIPVPTEG EQIPQSPSVA SNAGETTCQE VQSQYKKTSV PIPEDYAGSS TTSNEEAMFQ  420
VQSQYKNTEM PILKDNGDLF TAFDAEAKFP EVRNVCLMEI FYSCEVKEAN SVLKFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-221115814171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G005300.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611971.10.0NAC domain-containing protein 59-like isoform X2
TrEMBLA0A2C9VS730.0A0A2C9VS73_MANES; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.13e-30NAC domain containing protein 4