PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G008500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 505aa    MW: 53998.8 Da    PI: 8.0662
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G008500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.9e-31263321259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d++++++tYeg+Hnh+
  Manes.05G008500.1.p 263 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCADDKTILITTYEGNHNHP 321
                          7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-34247323IPR003657WRKY domain
SuperFamilySSF1182906.02E-28255323IPR003657WRKY domain
PROSITE profilePS5081129.838257323IPR003657WRKY domain
SMARTSM007744.4E-37262322IPR003657WRKY domain
PfamPF031065.3E-27264321IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MDKQGRELAF LHSGDFLHQN PGLSDRLTHN SVDPSNSMIK EVDFFSRDRT DDKFPRDQEI  60
KDGSSSVLVH SVVNTGLNLL TSSSGLSETA SGNKPNYELK KLQAELDSLY DENKKLRSLL  120
DQITRSYKDL QLQLLMAMQK QAQGSRGEQK GELNNGISIP IMSAKQLVVP RPSAALDVND  180
NSVSEDKAQD ISASPTIIPE AMSQINPGKQ ASTEDGLDQT SQSWGSPKSP RLEEGKGEQK  240
VPEVPFRKAR VSVRARSEAP MITDGCQWRK YGQKMAKGNP CPRAYYRCTM AAGCPVRKQV  300
QRCADDKTIL ITTYEGNHNH PLPPAATAMA STTSAAAAML LSGSTTSKEG LPSNNSFFPS  360
LPYASTMATL SASAPFPTIT LDLTQSPNST PFLRPPPPTT FPLPLHGCPQ LLGHPMYAPP  420
KLPAAAIPSL QLGQRHASMV ETVTAAIASD PNFTAALAAA ISSIIGTQRS NIDGSSNTNA  480
PNGGLTGLPG SPQLPQSCTT FSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21249325176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G008500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276380.0KT827638.1 Manihot esculenta WRKY transcription factor 63 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611726.10.0probable WRKY transcription factor 47
TrEMBLA0A140H8R70.0A0A140H8R7_MANES; WRKY transcription factor 63
STRINGcassava4.1_006003m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.11e-80WRKY family protein
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]