PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G018700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 240aa    MW: 27463.7 Da    PI: 4.8062
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G018700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.3e-193385456
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         +++f++eq++ Le++Fe+++ + a+++ +LA++lgL+ rqV +WFqN+Ra++k
  Manes.05G018700.1.p 33 KRRFSDEQIKSLESMFESESRLEARKKLQLANELGLQPRQVAIWFQNKRARWK 85
                         578*************************************************9 PP
2HD-ZIP_I/II120.58.9e-3932123293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +krr+s+eq+k+LE++Fe+e++Le ++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+++L+ +l
  Manes.05G018700.1.p  32 NKRRFSDEQIKSLESMFESESRLEARKKLQLANELGLQPRQVAIWFQNKRARWKSKQLERDYSILRSNYNSLSTRFESLKKEKQALAVQL 121
                          69*************************************************************************************999 PP

          HD-ZIP_I/II  92 ke 93 
                          ++
  Manes.05G018700.1.p 122 QK 123
                          87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-191189IPR009057Homeodomain-like
PROSITE profilePS5007117.8482787IPR001356Homeobox domain
SMARTSM003892.8E-163091IPR001356Homeobox domain
PfamPF000465.2E-173385IPR001356Homeobox domain
CDDcd000861.18E-143388No hitNo description
Gene3DG3DSA:1.10.10.603.2E-193494IPR009057Homeodomain-like
PRINTSPR000311.7E-55867IPR000047Helix-turn-helix motif
PROSITE patternPS0002706285IPR017970Homeobox, conserved site
PRINTSPR000311.7E-56783IPR000047Helix-turn-helix motif
PfamPF021832.2E-1587129IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MMLDEAQYSP STQEPFSSID TLATPRKKKN MNKRRFSDEQ IKSLESMFES ESRLEARKKL  60
QLANELGLQP RQVAIWFQNK RARWKSKQLE RDYSILRSNY NSLSTRFESL KKEKQALAVQ  120
LQKLNDLMQK PKEEGGCCVA VNSNEGESEN RDATKCDSEE KASLLYERSA HGLGVVSDED  180
SKIKVEYFGL EEEHNLMSMV EMEPADGSLT TSQEDWGSLD SDGLFGQSNS CCQWWDFWA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G018700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613627.11e-177homeobox-leucine zipper protein ATHB-12-like isoform X1
SwissprotP468972e-64ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2C9VSJ41e-176A0A2C9VSJ4_MANES; Uncharacterized protein
STRINGcassava4.1_015049m1e-177(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-66homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]