PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.05G020600.3.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 239aa MW: 25925.7 Da PI: 8.9958

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.05G020600.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	20	80	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s Manes.05G020600.3.p 20 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSA 80 6899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	19	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-33	22	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MEEISSNACT RPVLERKARP QEQLNCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60 GGSLRNVPVG GGSRKNKRSA SSSSSSSAAV SSSSSASSKL PDLNPPSLSQ FSSPNPKTHE 120 GQDLNLAFPA IQENQALELL RTGIDSRGLN SFIPTLMPES NTLYSSGFPM QEFKPTLSFS 180 VEGLGSRYGV QENGGRTLFP FGEMKQLSST TEVDQNKGQG TSSNGYWNGM FGGGGGSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.05G020600.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021612086.1	1e-174	dof zinc finger protein DOF3.7-like isoform X4
Swissprot	Q43385	4e-73	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A2C9VSI7	1e-173	A0A2C9VSI7_MANES; Uncharacterized protein
TrEMBL	A0A2C9VSL1	1e-173	A0A2C9VSL1_MANES; Uncharacterized protein
STRING	POPTR_0002s17490.1	1e-133	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	4e-66	Dof family protein

Link Out ? help Back to Top
Phytozome	Manes.05G020600.3.p