PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G020800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 286aa    MW: 32133.3 Da    PI: 9.2238
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G020800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+ Ed ll+++++  G g+W++ +++ g+ R++k+c++rw +yl
  Manes.05G020800.1.p 14 RGPWTPREDTLLIKYIQSRGEGNWRSLPKKAGLLRCGKSCRLRWMNYL 61
                         89******************************99************97 PP
2Myb_DNA-binding52.21.4e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ T++Ed+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l
  Manes.05G020800.1.p  67 RGNITPDEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                          7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.986961IPR017930Myb domain
SuperFamilySSF466898.44E-3011108IPR009057Homeodomain-like
SMARTSM007174.0E-111363IPR001005SANT/Myb domain
PfamPF002493.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-231568IPR009057Homeodomain-like
CDDcd001672.33E-91661No hitNo description
PROSITE profilePS5129426.28462116IPR017930Myb domain
SMARTSM007173.3E-1666114IPR001005SANT/Myb domain
PfamPF002495.6E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2669116IPR009057Homeodomain-like
CDDcd001674.58E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTPR EDTLLIKYIQ SRGEGNWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR MHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLRSQG  120
TDPNTHKKLA ETVQQQGKKK KKNNNNTSRN SKNKNNKAKV ELEKAKVIHL PRPVRFSSLS  180
LLRNDSFECN TSLSSCQGGE GEGEGGLSAE AVTENPWCSF KYDHDDGISF LVGDVDHDIV  240
NGPDLGCVPA SNANLEKLYE EYLQLLKTDD DHGKLDYSFA ESLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142GKKKKKN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G020800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612408.10.0myb-related protein 308-like
SwissprotP813938e-67MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2C9VUR10.0A0A2C9VUR1_MANES; Uncharacterized protein
STRINGcassava4.1_013293m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-69myb domain protein 5
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]