PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.05G028900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 174aa    MW: 19876.6 Da    PI: 9.3941
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.05G028900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.3e-3294152159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vk+s +prsYYrCt ++C+vkk+v+r ++d+++v++tYeg Hnh+
  Manes.05G028900.1.p  94 LDDGYRWRKYGQKSVKNSAYPRSYYRCTNHTCNVKKQVQRLSKDTSMVVTTYEGIHNHP 152
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-3380152IPR003657WRKY domain
SuperFamilySSF1182902.88E-2888153IPR003657WRKY domain
PROSITE profilePS5081129.19589154IPR003657WRKY domain
SMARTSM007745.1E-3894153IPR003657WRKY domain
PfamPF031066.3E-2695152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MEMEGQEAPQ LPPHLFSPSS SLHPPFIDPQ LLPHIDWVSL LSGQAAVGDE RPSTIESASV  60
IAEEQKDRRK SGRLMKKHSR PRFAFQTKSP DDILDDGYRW RKYGQKSVKN SAYPRSYYRC  120
TNHTCNVKKQ VQRLSKDTSM VVTTYEGIHN HPCEKLMETL TPLLKQMQFL SSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2584151774Probable WRKY transcription factor 4
2ayd_A2e-2582151271WRKY transcription factor 1
2lex_A2e-2584151774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00317DAPTransfer from AT2G46130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.05G028900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276060.0KT827606.1 Manihot esculenta WRKY transcription factor 31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614226.11e-128probable WRKY transcription factor 43
SwissprotQ8GY118e-56WRK43_ARATH; Probable WRKY transcription factor 43
SwissprotQ9FFS36e-55WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A2C9VU911e-127A0A2C9VU91_MANES; Uncharacterized protein
STRINGcassava4.1_022398m1e-126(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.13e-58WRKY DNA-binding protein 43
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]
  2. Geilen K,Heilmann M,Hillmer S,Böhmer M
    WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions.
    Sci Rep, 2017. 7(1): p. 14235
    [PMID:29079824]